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ProgeniDB: A Novel Cell Lineage Database for Generation Associated Phenotypic Behavior in Cell-based Assays
Imtiaz A. Khan, Peter Husemann, Lee Campbell, Nick S. White, Richard J. White, Paul J. Smith and Rachel J. Errington
volume 6 | issue 7
1 April 2007Pages: 868 - 874
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ProgeniDB is a web-accessible cell lineage database, which comprises data derived from time-lapse microscopy image sequences, using our novel encoding software tool called ProgeniTRAK. This database provides information on qualitative and quantitative changes in cellular dynamics in response to anticancer drugs variation, which is critical for pharmacodynamic modeling and validation. The lineage data for each progenitor cell centers around the construction of a bifurcation map, locating in both space and time critical cellular events such as cell division and cell death. This database provides the opportunity to select a set of lineages based on different experimental constraints and observe the associated phenotypic behavior of progenitor cells. The output generated from this database depicts the cellular dynamic of selected population which can be downloaded to explore and exploit in relation to hypothesis-driven drug discovery. A case study is presented where we interrogate drug induced perturbations on ensuing cell lineages. The database is available at http://biodiversity.cs.cf.ac.uk/cymart/progenidb.html
Authors
Imtiaz A. Khan
Cardiff University School of Medicine, Cadiff, UK
Peter Husemann
Bielefeld University, Bielefeld, Germany
Lee Campbell
Cardiff University School of Medicine, Cadiff, UK
Nick S. White
University of Oxford, Oxford, UK
Richard J. White
Cardiff University, Cadiff, UK
Paul J. Smith
Cardiff University School of Medicine, Cadiff, UK
Rachel J. Errington
Cardiff University, Cadiff, UK
We now provide open access to journal articles published online for one year or more. This article may be downloaded at the following link:
Download PDF If the document does not open, please right-click on the link (control-click on a Macintosh) and select the option to save the file to disk.