Abstract:
MicroRNAs (miRNAs) belong to an abundant class of highly conserved small (22nt) non-coding RNAs. MiRNA profiling studies indicate that their expression is highly cell type-dependent. DICER1 is an essential RNase III endoribonuclease for miRNA processing. Hematopoietic cell type- and developmental stage-specific Dicer1 deletion models show that miRNAs are essential regulators of cellular survival, differentiation and function. For instance, miRNA deficiency in hematopoietic stem cells and progenitors of different origins results in decreased cell survival, dramatic developmental aberrations or dysfunctions in mice. We recently found that homozygous Dicer1 deletion in myeloid-committed progenitors results in an aberrant expression of stem cell genes and induces a regained self-renewal capacity. Moreover, Dicer1 deletion causes a block in macrophage development and myeloid dysplasia, a cellular condition that may be considered as a preleukemic state. However, Dicer1-null cells do not develop leukemia in mice, indicating that depletion of miRNAs is not enough for tumorigenesis. Surprisingly, we found that heterozygous Dicer1 deletion in myeloid-committed progenitors, but not Dicer1 knockout, collaborates with p53 deletion in leukemic progression and results in various types of leukemia. Our data indicate that Dicer1 is a haploinsufficient tumorsuppressor in hematopoietic neoplasms, which is consistent with the observed downregulation of miRNA expression in human leukemia samples. Here, we review the various hematopoietic specific Dicer1 deletion mouse models and the phenotypes observed within the different hematopoietic lineages and cell developmental stages. Finally, we discuss the role for DICER1 in mouse and human malignant hematopoiesis.
Received: June 1, 2012; Accepted: June 9, 2012
MicroRNAs (miRNAs) belong to an abundant class of highly conserved small (22nt) non-coding RNAs. MiRNA profiling studies indicate that their expression is highly cell type-dependent. DICER1 is an essential RNase III endoribonuclease for miRNA processing. Hematopoietic cell type- and developmental stage-specific Dicer1 deletion models show that miRNAs are essential regulators of cellular survival, differentiation and function. For instance, miRNA deficiency in hematopoietic stem cells and progenitors of different origins results in decreased cell survival, dramatic developmental aberrations or dysfunctions in mice. We recently found that homozygous Dicer1 deletion in myeloid-committed progenitors results in an aberrant expression of stem cell genes and induces a regained self-renewal capacity. Moreover, Dicer1 deletion causes a block in macrophage development and myeloid dysplasia, a cellular condition that may be considered as a preleukemic state. However, Dicer1-null cells do not develop leukemia in mice, indicating that depletion of miRNAs is not enough for tumorigenesis. Surprisingly, we found that heterozygous Dicer1 deletion in myeloid-committed progenitors, but not Dicer1 knockout, collaborates with p53 deletion in leukemic progression and results in various types of leukemia. Our data indicate that Dicer1 is a haploinsufficient tumorsuppressor in hematopoietic neoplasms, which is consistent with the observed downregulation of miRNA expression in human leukemia samples. Here, we review the various hematopoietic specific Dicer1 deletion mouse models and the phenotypes observed within the different hematopoietic lineages and cell developmental stages. Finally, we discuss the role for DICER1 in mouse and human malignant hematopoiesis.
DICER1 is an evolutionarily conserved member of the RNase III family of endoribonucleases. The gene encoding DICER1 is located on human chromosome 14q32 and mouse chromosome 12E. DICER1 is a complex protein and contains three N-terminal Helicase domains (HEL1, HEL2i, HEL2), a DUF283 domain, which is presumably involved in binding of double-stranded RNA (dsRNA), a Platform domain, the pre-miRNA binding domain PAZ, RNase IIIa, RNase IIIb and a C-terminal dsRNA binding domain (dsRBD).
Genetic studies in plants, zebrafish and mice show that Dicer1 is essential for normal development.
In one of the first studies addressing the role of Dicer1 in hematopoiesis in vivo, floxed Dicer1 alleles were deleted by CRE in lymphocyte-specific protein tyrosine kinase (Lck)-positive cells. In this model, Cre is active at the double-negative (DN) CD4-CD8- T cell developmental stage and results in Dicer1-null CD44-CD25- (DN4), CD4+CD8+ and CD4+CD8-, CD4-CD8- cells (
Figure 1. Schematic overview of the phenotypic characteristics of different CRE-mediated Dicer1-deletion models in lymphopoiesis (A) HSCs develop via different progenitors toward mature CD4+ or CD8+ single positive cells. The effects of LCK-Cre-mediated Dicer1 deletion are depicted. The apparent level of Dicer1 expression is indicated by the yellow background color (yellow: normal endogenous levels; white: no Dicer1 expression). HSC: hematopoietic stem cells, CLP: common lymphoid progenitor, DN1–3: double negative stage 1 to 3 (CD4-CD8-), DN4: double negative stage 4, DP: double positive CD4+CD8+ cells. Phenotypic characteristics are indicated by the red arrows and lines. Dashed lines indicate less cells than in wild-type situation. (B) See also (A). The effects of CD4-Cre-mediated Dicer1 deletion are depicted. Phenotypic characteristics are indicated by the red arrow and lines. (C) See also (A). The effects of FoxP3-Cre-mediated Dicer1 deletion results in normal numbers of regulatoty T-cells (Tregs) but these cells are functionally aberrant. (D) HSCs develop via indicated progenitors toward mature B-cells. The effects of MB1-Cre-mediated Dicer1 deletion are indicated by the red lines and arrow and result in developmental block from the pro-B-cell to the pre-B-cell stage. Pro-B: earliest stage of progenitor B-cell development, pre-B-cell, precursor stage of B-cell development. (E) See also (D) CD19-Cre-mediated deletion of Dicer1 results in mature B-cells which are functionally aberrant.
The CD4-Cre transgenic mouse model enables investigation of the consequences of Dicer1 deletion at a later stage of T cell development (
Two studies revealed the role of Dicer1 more specifically in the function of mature Tregs, using a Foxp3-Cre knock-in mouse (
The role of miRNAs in invariant Natural Killer T (iNKT) cells was studied in a mouse strain by Tie2-Cre-mediated disruption of Dicer1.
Ablation of Dicer1 in early B cell progenitors, mediated by the Mb1-Cre allele, which is expressed at the earliest stage of B-cell development, blocks B-cell development almost completely at the pro-B-cell (B220low, c-kit+ CD25-) to pre-B-cell (B220int, c-kit-, CD25+) transition (
The role of miRNAs in terminal B cell differentiation is addressed by the analysis of CD19-Cre driven Dicer1-deletion mouse model (
To investigate the role for Dicer1 in antigen-activated, but not naive B cells, an activation-induced cytadine deaminase (Aicda)-Cre-mediated Dicer1 deletion mouse model has been generated.
Bezman et al. induced ablation of conditional Dicer1 alleles with a tamoxifen-inducible Cre recombinase (human estrogen receptor (ERT2)-Cre) and studied the effects of miRNA depletion in NK cells.
The consequences of Dicer1 deletion in hematopoietic stem and progenitor cells (HSPCs) was first studied by breeding Dicer1fl/fl with Mx-Cre mice.
To address the question whether miRNAs play a role in early myeloid-lineage decisions, we deleted Dicer1 in CCAAT/enhancer-binding protein α (C/EBPA)-positive myeloid-committed progenitors in vivo (
Figure 2. Schematic overview of the results of C/ebpa-Cre-mediated deletion of Dicer1 in myeloid-committed progenitors. Phenotypic characteristics are indicated in red. In short, deletion of Dicer1 results in derepression of stem cell genes in myeloid progenitors and an enhanced self-renewal capacity. Furthermore, MDPs and GMPs are blocked in macrophage and dendritic cell development. In addition, Dicer1 deletion results in neutrophil dysplasia with cells that are characteristic for Pelger-Huet anomaly. HSC/LSK: hematopoietic stem cells/Lin-;ScaI+; Kit+, CMP: common myeloid progenitor, GMP: granulocyte-macrophage progenitor, MEP: megakaryocytic-erythroid progenitor, MDP: macrophage-dendritic cell progenitor, CD11B: pan marker for myeloid cells, GR-1: marker for mature granulocytes.
MiRNA profiling of wild type GMPs showed that 104 miRNAs are abundantly expressed at this stage, of which at least 20 miRNA families are potentially active by reducing their target mRNA abundance.
Human cancer including different types of leukemia is characterized by a global reduction in miRNA expression.
We asked whether Dicer1 deletion enhances myeloid leukemia development in mice. In hematopoietic cells, C/ebpa starts to be expressed in early myeloid-committed progenitors, making it a suitable promoter to drive Dicer1 deletion for studying the role of miRNA depletion in myeloid leukemias.
Figure 3. Leukemia developed from C/ebpa-Cre; p53f/f; Dicer1 f/wt HSCs. (A) Cumulative survival of mice transplanted with HSCs from fetal livers of C/ebpa-Cre; p53f/f; Dicer1 wt (n = 8), C/ebpa-Cre; p53f/f; Dicer1 f/wt (n = 12) and C/ebpa-Cre; p53f/f; Dicer1 f/f (n = 8) embryos. Significance: p < 0.05 (log-rank Mantel-Cox test). (B) PCR on genomic DNA extracted from tumor cells. K.O.: knockout allele, fl: floxed allele, wt: wild type allele, li: liver, BM: bone marrow, spl: spleen, con: control DNA heterozygous floxed Dicer1, neg: loading control. (C) Example of tumor infiltration in liver and spleen of leukemic mice transplanted with C/ebpa-Cre; p5 f/f; Dicer f/wt HSCs. (D) Micrographs showing morphology of tumor cells in blood, bone marrow and Spleen. Bar indicates 10 μm.
Figure 4. Model for the role of Dicer1 in leukemia development. Dicer1 knockout and as a result total loss of miRNA biogenesis, lead to myeloid dysplasia but not leukemia in a p53 knockout background. In contrast, heterozygous loss of Dicer1 conserves the expression of a set of miRNAs needed for normal differentiation. Furthermore, our model suggests that at least some miRNA activity is needed for oncogenic transformation.
To date, the mechanism behind the reduced miRNA expression in subsets of human myeloid leukemia samples still remains elusive. One possibility is that the widespread silencing of miRNAs is the result of a defect in miRNA biogenesis caused by mutations in the gene encoding DICER1. For instance, data from Cancer Genome Project at the Wellcome Trust Sanger Institute (www.sanger.ac.uk/cosmic) show that somatic DICER1 mutations occur in different human tumors, including lung carcinoma, malignant melanoma and ovarian cancer.
In a first attempt to gain more functional insight into the mechanisms behind the reduced miRNA expression in AML, a panel of 45 AML samples, characterized by activation of the oncogene EVI-1 due to t(3;3)(q21;q26) or inv(3)(q21q26) and poor prognosis, and five AML cell lines, including U937, MOLM1, MUTZ3, KASUMI-3 and F36P, were sequenced. In this panel of high-risk AML samples, no mutation in Dicer1 coding sequences and untranslated regions were identified (unpublished data, Erkeland S.J., Valk P., Delwel H., Sanders M.A., Groschel S. and Hoogenboezem R., 2012). Despite the limited set of data, this result suggests that other mechanisms are involved in deregulation of miRNA expression in human AML.
The expression of miRNAs may be deregulated by different mechanisms in human cancer.
Reduction of miRNA expression may be controlled by other mechanisms as well. This hypothesis is supported by recently described mutations in the TAR RNA-binding protein 2 (TARBP2), a critical protein for processing miRNAs in sporadic and hereditary carcinomas, and the inactivating mutations in Exportin-5, which results in trap of pre-miRNAs in the nucleus in human cancer cells.
To generate the different mouse lines of interest, we first crossed C/ebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl mice
Peripheral blood was obtained by heart puncture at the moment of euthanasia. Bone marrow cell suspensions were prepared as described previously.
Kaplan-Meier survival curves were plotted using SPSS software (SPSS, PASW, 17.0.2), and log-rank Mantel-Cox test was used to determine statistical significance.
Recent data show that Dicer1 is an essential factor at different stages of normal hematopoiesis. A limitation of the Dicer1-deletion models is the global depletion of miRNAs that presumably results in disruption of many cellular pathways simultaneously, which hampers the identification of the functions of individual miRNAs. Although some studies show evidence for only a few miRNAs making dominant contributions, such as miR-17~92 in B-cell development, this may be different for other cell types or even be developmental stage-dependent. Overall, Dicer1 mainly controls survival and expansion at the early stages of lymphoid development and controls cellular activities at the terminal maturation stage. The function of Dicer1 is different in myelopoiesis at the earliest developmental stage as Dicer1 is not essential for cell viability but instead controls essential steps in switching from the stem cell stage toward myeloid lineage development. Although the functions of some miRNAs, such as miR-17/20/93/106 and miR-223, are well-described in immature and mature myeloid cells, respectively,
We thank Dr. T Cupedo and Dr. M. Buitenhuis for critical reading of the manuscript and E. Simons for assistance with the preparation of the figures. We also thank Dr. K. van Lom for the microscopic analysis of leukemias. Our work was supported by grants from the Netherlands Organisation for Scientific Research (NWO-VENI) and the Dutch Cancer Society (KWF). There are no conflicts of interests.

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