Table of Contents

Volume 4, Issue 2

  February 16, 2008

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Editor's Corner

• Getting into the flow

  Daniel J. Klionsky
  Pages 139 - 140

Reviews

• Sorting, recognition and activation of the misfolded protein degradation pathways through macroautophagy and the proteasome

  Open Access Article

  Wen-Xing Ding and Xiao-Ming Yin
  Pages 141 - 150

• Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes

  Daniel J. Klionsky, Hagai Abeliovich, Patrizia Agostinis, Devendra K. Agrawal, Gjumrakch Aliev, David S. Askew, Misuzu Baba, Eric H. Baehrecke, Ben A. Bahr, Andrea Ballabio, Bruce A. Bamber, Diane C. Bassham, Ettore Bergamini, Xiaoning Bi, Martine Biard-Piechaczyk, Janice S. Blum, Dale E. Bredesen, Jeffrey L. Brodsky, John H. Brumell, Ulf T. Brunk, Wilfried Bursch, Nadine Camougrand, Eduardo Cebollero, Francesco Cecconi, Yingyu Chen, Lih-Shen Chin, Augustine Choi, Charleen T. Chu, Jongkyeong Chung, Robert S.B. Clark, Peter G.H. Clarke, Steven G. Clarke, Corinne Clave, John L. Cleveland, Patrice Codogno, María Isabel Colombo, Ana Coto-Montes, James M. Cregg, Ana Maria Cuervo, Jayanta Debnath, Patrick B. Dennis, Phillip A. Dennis, Francesca Demarchi, Vojo Deretic, Rodney J. Devenish, Federica Di Sano, J. Fred Dice, Clark W. Distelhorst, Savithramma P. Dinesh-Kumar, N. Tony Eissa, Marian DiFiglia, Mojgan Djavaheri-Mergny, Frank C. Dorsey, Wulf Dröge, Michel Dron, William A. Dunn, Jr., Michael Duszenko, Zvulun Elazar, Audrey Esclatine, Eeva-Liisa Eskelinen, László Fésüs, Kim D. Finley, José M. Fuentes, Juan Fueyo, Kozo Fujisaki, Brigitte Galliot, Fen-Biao Gao, David A. Gewirtz, Spencer B. Gibson, Antje Gohla, Alfred L. Goldberg, Ramon Gonzalez, Cristina González-Estévez, Sharon M. Gorski, Roberta A. Gottlieb, Dieter Häussinger, You-Wen He, Kim Heidenreich, Joseph A. Hill, Maria Høyer-Hansen, Xun Hu, Wei-Pang Huang, Akiko Iwasaki, Marja Jäättelä, William T. Jackson, Xuejun Jiang, Shengkan Jin, Terje Johansen, Jae U. Jung, Motoni Kadowaki, Chanhee Kang, Ameeta Kelekar, David H. Kessel, Jan A.K.W. Kiel, Hong Pyo Kim, Adi Kimchi, Timothy J. Kinsella, Kirill Kiselyov, Katsuhiko Kitamoto, Erwin Knecht, Masaaki Komatsu, Eiki Kominami, Seiji Kondo, Attila L. Kovács, Guido Kroemer, Chia-Yi Kuan, Rakesh Kumar, Mondira Kundu, Jacques Landry, Marianne Laporte, Weidong Le, Huan-Yao Lei, Beth Levine, Andrew Lieberman, Kah-Leong Lim, Fu-Cheng Lin, Willisa Liou, Leroy F. Liu, Gabriel Lopez-Berestein, Carlos López-Otín, Bo Lu, Kay F. Macleod, Walter Malorni, Wim Martinet, Ken Matsuoka, Josef Mautner, Alfred J. Meijer, Alicia Meléndez, Paul Michels, Giovanni Miotto, Wilhelm P. Mistiaen, Noboru Mizushima, Baharia Mograbi, Michael N. Moore, Paula I. Moreira, Yuji Moriyasu, Tomasz Motyl, Christian Münz, Leon O. Murphy, Naweed I. Naqvi, Thomas P. Neufeld, Ichizo Nishino, Ralph A. Nixon, Takeshi Noda, Bernd Nürnberg, Michinaga Ogawa, Nancy L. Oleinick, Laura J. Olsen, Bulent Ozpolat, Shoshana Paglin, Glen E. Palmer, Issidora S. Papassideri, Miles Parkes, David H. Perlmutter, George Perry, Mauro Piacentini, Ronit Pinkas-Kramarski, Mark Prescott, Tassula Proikas-Cezanne, Nina Raben, Abdelhaq Rami, Fulvio Reggiori, Bärbel Rohrer, David C. Rubinsztein, Kevin M. Ryan, Junichi Sadoshima, Hiroshi Sakagami, Yasuyoshi Sakai, Marco Sandri, Chihiro Sasakawa, Miklós Sass, Claudio Schneider, Per O. Seglen, Oleksandr Seleverstov, Jeffrey Settleman, John J. Shacka, Irving M. Shapiro, Andrei A. Sibirny, Elaine C.M. Silva-Zacarin, Hans-Uwe Simon, Cristiano Simone, Anne Simonsen, Mark A. Smith, Katharina Spanel-Borowski, Vickram Srinivas, Meredith Steeves, Harald Stenmark, Per E. Stromhaug, Carlos S. Subauste, Seiichiro Sugimoto, David Sulzer, Toshihiko Suzuki, Michele S. Swanson, Ira Tabas, Fumihiko Takeshita, Nicholas J. Talbot, Zsolt Tallóczy, Keiji Tanaka, Kozo Tanaka, Isei Tanida, Graham S. Taylor, J. Paul Taylor, Alexei Terman, Gianluca Tettamanti, Craig B. Thompson, Michael Thumm, Aviva M. Tolkovsky, Sharon A. Tooze, Ray Truant, Lesya V. Tumanovska, Yasuo Uchiyama, Takashi Ueno, Néstor L. Uzcátegui, Ida J. van der Klei, Eva C. Vaquero, Tibor Vellai, Michael W. Vogel, Hong-Gang Wang, Paul Webster, Zhijun Xi, Gutian Xiao, Joachim Yahalom, Jin-Ming Yang, George S. Yap, Xiao-Ming Yin, Tamotsu Yoshimori, Zhenyu Yue, Michisuke Yuzaki, Olga Zabirnyk, Xiaoxiang Zheng, Xiongwei Zhu and Russell L. Deter
  Pages 151 - 175

Research Papers

• Promoting basal levels of autophagy in the nervous system enhances longevity and oxidant resistance in adult Drosophila

  Anne Simonsen, Robert C. Cumming, Andreas Brech, Pauline Isakson, David R. Schubert and Kim D. Finley
  Pages 176 - 184

• Macroautophagy-dependent, intralysosomal cleavage of a betaine homocysteine methyltransferase fusion protein requires stable multimerization

  Open Access Article

  Carol A. Mercer, Alagammai Kaliappan and Patrick B. Dennis
  Pages 185 - 194

• Hypoxia induces autophagic cell death in apoptosis-competent cells through a mechanism involving BNIP3

  Meghan B. Azad, Yongqiang Chen, Elizabeth S. Henson, Jeannick Cizeau, Eileen McMillan-Ward, Sara J. Israels and Spencer B. Gibson
  Pages 195 - 204

• Rosella: A fluorescent pH-biosensor for reporting vacuolar turnover of cytosol and organelles in yeast

  Carlos Rosado, Dalibor Mijaljica, Irene Hatzinisiriou, Mark Prescott and Rodney J. Devenish
  Pages 205 - 213

• An autophagic mechanism is involved in apoptotic death of rat striatal neurons induced by the non-N-methyl-D-aspartate receptor agonist kainic acid

  Yan Wang, Rong Han, Zhong-Qin Liang, Jun-Chao Wu, Xing-Ding Zhang, Zhen-Lun Gu and Zheng-Hong Qin
  Pages 214 - 226

Article Addenda

• Upregulation of Beclin 1 in the ischemic penumbra

  Abdelhaq Rami
  Pages 227 - 229

• Roles of ESCRT in autophagy-associated neurodegeneration

  Open Access Article

  Jin-A Lee and Fen-Biao Gao
  Pages 230 - 232

• ESCRTing autophagic clearance of aggregating proteins

  Tor Erik Rusten, Maria Filimonenko, Lina M. Rodahl, Harald Stenmark and Anne Simonsen
  Pages 233 - 236

• HspB8 and Bag3: A new chaperone complex targeting misfolded proteins to macroautophagy

  Serena Carra, Samuel J. Seguin and Jacques Landry
  Pages 237 - 239

• Cell death in fetal oocytes: Many players for multiple pathways

  Massimo De Felici, Anna Maria Lobascio and Francesca Gioia Klinger
  Pages 240 - 242

• Transport of autophagosomes in neurites of PC12 cells during serum deprivation

  Yi Yang, Kedi Xu, Tatsuro Koike and Xiaoxiang Zheng
  Pages 243 - 245

• Is mitochondrial generation of reactive oxygen species a trigger for autophagy?

  Yongqiang Chen and Spencer B. Gibson
  Pages 246 - 248

• Inducing autophagy harmlessly

  Junying Yuan
  Pages 249 - 250

• Lysine 63-linked polyubiquitin potentially partners with p62 to promote the clearance of protein inclusions by autophagy

  Jeanne M.M Tan, Esther S.P. Wong, Valina L. Dawson, Ted Dawson and Kah-Leong Lim
  Pages 251 - 253

• Autophagy as a second level protective process in conferring resistance to environmentally-induced oxidative stress

  Michael N. Moore
  Pages 254 - 256

Views and Commentaries

• To be or not to be? Examples of incorrect identification of autophagic compartments in conventional transmission electron microscopy of mammalian cells

  Eeva-Liisa Eskelinen
  Pages 257 - 260