Chapter Category: Cell Biology

From the book The Coronin Family of Proteins

Molecular Phylogeny and Evolution of the Coronin Gene Family

Reginald O. Morgan and M. Pilar Fernandez

The coronin gene family comprises seven vertebrate paralogs and at least five unclassified subfamilies in nonvertebrate metazoa, fungi and protozoa, but no representatives in plants or distant protists. All known members exhibit elevated structural conservation in two unique domains of unknown function (DUF1899 and DUF1900) interspaced by three canonical WD40 domains (plus additional pseudo domains) that form part of a 7‑bladed β‑propeller scaffold, plus a C‑terminal variable “coiled coil domain” responsible for oligomerization. Phylogenetic analysis of the N‑terminal conserved region in known members (i.e. 420 aa in 250 taxa) established the origin of the founding monomeric unit and a dimeric paralog in unicellular eukaryotes. The monomeric ancestor duplicated to two distinct lineages in basal metazoa and later propagated during the whole genome duplications in primitive chordates 450‑550 million years ago to form six vertebrate‑specific genes. The delineation of 12 subfamily clades in distinct phyla provided a rational basis for proposing a simplified, universal nomenclature for the coronin family in accordance with evolutionary history, structural relationships and functional divergence. Comparative genomic analysis of coronin subfamily locus maps and gene organization provided corroboratory evidence for their chromosomal dispersal and structural relatedness. Statistical analysis of evolutionary sequence conservation by profile hidden Markov models (pHMM) and the prediction of Specificity Determining Positions (SDPpred) helped to characterize coronin domains by highlighting structurally conserved sites relevant to coronin function and subfamily divergence. The incorporation of such evolutionary information into 3D models facilitated the distinction between candidate sites with a structural role versus those implicated in dynamic, actin‑related cytoskeletal interactions. A highly conserved “KGD” motif identified in the coronin DUF1900 domain has been observed in other actin‑binding proteins such as annexins and is a potential ligand for integrins and C2 domains known to be associated with structural and signalling roles in the membrane cytoskeleton. Molecular evolution studies provide a comprehensive overview of the structural history of the coronin gene family and a systematic methodology to gain deeper insight into the function(s) of individual members.

Taken from the book

The Coronin Family of Proteins

Edited by: Christoph Clemen, Ludwig Eichinger and Vasily Rybakin

More chapters from the book:

Most coronin proteins rely on interaction with actin in their functions. Mammalian coronin 7 has not been shown to interact with actin, but rather to bind to the outer side of Golgi complex membranes. Targeting of coronin 7 to Golgi membranes requires the activity of Src kinase and integrity of...


Introduction:

The Coronin Family of Proteins

Christoph S. Clemen, Vasily Rybakin and Ludwig Eichinger

The coronins, first described in Dictyostelium discoideum in 1991, have meanwhile been detected in all eukaryotes except plants. They belong to the superfamily of WD40‑repeat proteins and represent a large family of proteins, which are often involved in cytoskeletal functions. Phylogenetic...


The WD‑repeat‑containing proteins form a very large family that is diverse in both its function and domain structure. Within all these proteins the WD‑repeat domains are thought to have two common features: the domain folds into a beta propeller; and the domains form a platform without any...


What I’d like to do in this chapter is to share with you my recollections from the earliest days of coronin research and then to provide an overview of the still‑developing story of this fascinating family of proteins. In the fall of 1989 I arrived as a postdoc in Guenther Gerisch’s...


The β‑propeller domain is a widespread protein organizational motif. Typically, β‑propeller proteins are encoded by repeated sequences where each repeat unit corresponds to a twisted β‑sheet structural motif; these β‑sheets are arranged in a circle around a central axis to generate...


The Role of Mammalian Coronins in Development and Disease
David W. Roadcap, Christoph S. Clemen and James E. Bear

Coronins have maintained a high degree of conservation over the roughly 800 million years of eukaryotic evolution. From its origins as a single gene in simpler eukaryotes, the mammalian Coronin gene family has expanded to include at least six members (see Chapter 4). Increasing evidence indicates...


Invertebrate Coronins
Maria-Christina Shina and Angelika A. Noegel

Coronins are highly conserved among species, but their function is far from being understood in detail. Here we will introduce members of the family of coronin like proteins from Drosophila melanogaster, Caenorhabditis elegans and the social amoeba Dictyostelium discoideum. Genetic data from D....


Evolutionary and Functional Diversity of Coronin Proteins
Charles-Peter Xavier, Ludwig Eichinger, M. Pilar Fernandez, Reginald O. Morgan and Christoph Clemen

This chapter discusses various aspects of coronin phylogeny, structure and function that are of specific interest. Two subfamilies of ancient coronins of unicellular pathogens such as Entamoeba, Trypanosoma, Leishmania and Acanthamoeba as well as of Plasmodium, Babesia, and Trichomonas are...


Coronin: The Double-Edged Sword of Actin Dynamics
Meghal Gandhi and Bruce L. Goode

Coronin is a conserved actin binding protein that promotes cellular processes that rely on rapid remodeling of the actin cytoskeleton, including endocytosis and cell motility. However, the exact mechanism by which coronin contributes to actin dynamics has remained elusive for many years. Here, we...


The WD repeat containing family of coronin proteins is generally referred to as F‑actin‑interacting proteins. While in lower eukaryotes such as Dictyostelium discoideum, the single short coronin protein regulates several F‑actin dependent processes such as motility, phagocytosis and...


Molecular Phylogeny and Evolution of the Coronin Gene Family
Reginald O. Morgan and M. Pilar Fernandez

The coronin gene family comprises seven vertebrate paralogs and at least five unclassified subfamilies in nonvertebrate metazoa, fungi and protozoa, but no representatives in plants or distant protists. All known members exhibit elevated structural conservation in two unique domains of unknown...


Coronin Structure and Implications
Bernadette McArdle and Andreas Hofmann

Until recently, structural information about coronins was scarce and the earlier identification of five WD40 repeats gave rise to a structural prediction of a five‑bladed β propeller for the N‑terminal domain of these proteins. More detailed analyses revealed the presence of seven WD40...


Advertisements